No. words: 1454; after pruning: 1428


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:567)  551  0.18 0.00 0.35  BF474092Ld11P067B05P067B111F1_086.ab1        1   569 (163)  C BF474092Ld11P067B05P067B111R1_086.ab1   (155)   567     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1  C BF474092Ld11P067B05P067B111R1_086.ab1   722 
  202    BF474092Ld11P067B05P067B111F1_086.ab1    47 
  226  C BF474092Ld11P067B05P067B111R1_086.ab1   497 
  238    BF474092Ld11P067B05P067B111F1_086.ab1    83 
  370  C BF474092Ld11P067B05P067B111R1_086.ab1   353 
  446    BF474092Ld11P067B05P067B111F1_086.ab1   291 
  458  C BF474092Ld11P067B05P067B111R1_086.ab1   265 
  570    BF474092Ld11P067B05P067B111F1_086.ab1   415 
  586  C BF474092Ld11P067B05P067B111R1_086.ab1   137 
  598    BF474092Ld11P067B05P067B111F1_086.ab1   443 
  610  C BF474092Ld11P067B05P067B111R1_086.ab1   113 
  626    BF474092Ld11P067B05P067B111F1_086.ab1   471 
  634  C BF474092Ld11P067B05P067B111R1_086.ab1    89 
  646    BF474092Ld11P067B05P067B111F1_086.ab1   491 
Contig length: old 886, new 887

Contig length: old 887, new 887
New start: 0