No. words: 1038; after pruning: 1012


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.2 (1,1:475)  461  0.00 0.00 0.42  BF474092Sn29P067B05P116C091F1_083.ab1        1   477 (38)  C BF474092Sn29P067B05P116C091R1_083.ab1   (48)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C BF474092Sn29P067B05P116C091R1_083.ab1   523 
   84    BF474092Sn29P067B05P116C091F1_083.ab1    36 
  124  C BF474092Sn29P067B05P116C091R1_083.ab1   400 
  200    BF474092Sn29P067B05P116C091F1_083.ab1   152 
  304  C BF474092Sn29P067B05P116C091R1_083.ab1   220 
  404    BF474092Sn29P067B05P116C091F1_083.ab1   356 
Contig length: old 562, new 563

Contig length: old 563, new 563
New start: 0