No. words: 1040; after pruning: 1014


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:477)  468  0.00 0.00 0.21  BF474092Td04P067B05P116C091F1_078.ab1        1   478 (38)  C BF474092Td04P067B05P116C091R1_078.ab1   (47)   477     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C BF474092Td04P067B05P116C091R1_078.ab1   524 
   87    BF474092Td04P067B05P116C091F1_078.ab1    40 
   91  C BF474092Td04P067B05P116C091R1_078.ab1   434 
   99    BF474092Td04P067B05P116C091F1_078.ab1    52 
  123  C BF474092Td04P067B05P116C091R1_078.ab1   402 
  147    BF474092Td04P067B05P116C091F1_078.ab1   100 
  151  C BF474092Td04P067B05P116C091R1_078.ab1   374 
  203    BF474092Td04P067B05P116C091F1_078.ab1   156 
Contig length: old 562, new 563

Contig length: old 563, new 563
New start: 0