No. words: 2366; after pruning: 2286


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:0)  570  0.17 0.00 0.00  BF474333As01P067C05P067C111R1_086.ab1        1   574 (0)    BF474333As01P067C05P067C111R1_007.ab1        1   574 (45) *
Merge:(0)    4    0.0 11.3 (1,1:-1)  562  0.00 0.00 0.00  BF474333As01P067C05P067C111F1_086.ab1        5   567 (0)    BF474333As01P067C05P067C111F1_007.ab1        6   568 (38) *
Merge:(0)    0    0.0 8.5 (2,2:799)  383  0.26 0.00 0.00  BF474333As01P067C05P067C111F1_086.ab1      182   567 (0)  C BF474333As01P067C05P067C111R1_007.ab1   (0)   619   234 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 4       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1300 nodes

 475 str. conn. components

Path
    1    BF474333As01P067C05P067C111F1_007.ab1     1 
    9    BF474333As01P067C05P067C111F1_086.ab1     8 
   29    BF474333As01P067C05P067C111F1_007.ab1    29 
   33    BF474333As01P067C05P067C111F1_086.ab1    32 
  186    BF474333As01P067C05P067C111F1_007.ab1   186 
  206    BF474333As01P067C05P067C111F1_086.ab1   205 
  320    BF474333As01P067C05P067C111F1_007.ab1   320 
  332    BF474333As01P067C05P067C111F1_086.ab1   331 
  340    BF474333As01P067C05P067C111F1_007.ab1   340 
  361    BF474333As01P067C05P067C111F1_086.ab1   360 
  408  C BF474333As01P067C05P067C111R1_007.ab1   394 
  424    BF474333As01P067C05P067C111F1_086.ab1   423 
  432  C BF474333As01P067C05P067C111R1_007.ab1   370 
  458  C BF474333As01P067C05P067C111R1_086.ab1   344 
  464  C BF474333As01P067C05P067C111R1_007.ab1   338 
  472  C BF474333As01P067C05P067C111R1_086.ab1   330 
  484  C BF474333As01P067C05P067C111R1_007.ab1   318 
  490  C BF474333As01P067C05P067C111R1_086.ab1   312 
  512  C BF474333As01P067C05P067C111R1_007.ab1   290 
  514  C BF474333As01P067C05P067C111R1_086.ab1   288 
  534  C BF474333As01P067C05P067C111R1_007.ab1   268 
  542  C BF474333As01P067C05P067C111R1_086.ab1   260 
  556  C BF474333As01P067C05P067C111R1_007.ab1   246 
  558  C BF474333As01P067C05P067C111R1_086.ab1   244 
  578  C BF474333As01P067C05P067C111R1_007.ab1   224 
  586  C BF474333As01P067C05P067C111R1_086.ab1   216 
  782  C BF474333As01P067C05P067C111R1_007.ab1    20 
  786  C BF474333As01P067C05P067C111R1_086.ab1    16 
Contig length: old 801, new 801

Contig length: old 801, new 801
New start: 0