No. words: 1973; after pruning: 1907


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 2.6 (1,1:591)  198  0.98 0.00 0.00  BF474333At02P067C05P067C111R1_061.ab1      317   521 (0)  C BF474333At02P067C05P067C111F1_001.ab1   (0)   276    72 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    1   -0.6 5.9 (2,1:45)  266  0.72 0.00 0.36  BF474333At02P067C05P067C111F1_001.ab1        1   276 (0)  C BF474333At02P067C05P067C111R1_001.ab1   (24)   546   272 *
Merge:(0)    0   -0.9 3.8 (3,1:847)  323  1.15 0.29 0.57  BF474333At02P067C05P067C111R1_001.ab1      223   570 (0)  C BF474333At02P067C05P067C111F1_061.ab1   (26)   580   234 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0
-0.9       1        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       3 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  816 nodes

 235 str. conn. components

Path
    1    BF474333At02P067C05P067C111R1_061.ab1     1 
  282    BF474333At02P067C05P067C111R1_001.ab1   237 
  312    BF474333At02P067C05P067C111R1_061.ab1   312 
  319    BF474333At02P067C05P067C111R1_001.ab1   274 
  328    BF474333At02P067C05P067C111R1_061.ab1   328 
  340    BF474333At02P067C05P067C111R1_001.ab1   295 
  359    BF474333At02P067C05P067C111R1_061.ab1   359 
  368    BF474333At02P067C05P067C111R1_001.ab1   323 
  372    BF474333At02P067C05P067C111R1_061.ab1   372 
  416    BF474333At02P067C05P067C111R1_001.ab1   371 
  424    BF474333At02P067C05P067C111R1_061.ab1   424 
  426  C BF474333At02P067C05P067C111F1_061.ab1   424 
  427    BF474333At02P067C05P067C111R1_001.ab1   382 
  432    BF474333At02P067C05P067C111R1_061.ab1   432 
  436    BF474333At02P067C05P067C111R1_001.ab1   391 
  439  C BF474333At02P067C05P067C111F1_061.ab1   411 
  459  C BF474333At02P067C05P067C111F1_001.ab1   134 
  467  C BF474333At02P067C05P067C111F1_061.ab1   383 
Contig length: old 848, new 849

Contig length: old 849, new 849
New start: 0