No. words: 1687; after pruning: 1661


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.0 (1,1:858)  815  0.36 0.00 0.00  BF474333Ld01P067C05P067C111F1_051.ab1       19   846 (0)  C BF474333Ld01P067C05P067C111R1_051.ab1   (0)   841    14 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1    BF474333Ld01P067C05P067C111F1_051.ab1     1 
   30  C BF474333Ld01P067C05P067C111R1_051.ab1   830 
   49    BF474333Ld01P067C05P067C111F1_051.ab1    49 
   77  C BF474333Ld01P067C05P067C111R1_051.ab1   783 
   81    BF474333Ld01P067C05P067C111F1_051.ab1    81 
  157  C BF474333Ld01P067C05P067C111R1_051.ab1   703 
  165    BF474333Ld01P067C05P067C111F1_051.ab1   165 
  169  C BF474333Ld01P067C05P067C111R1_051.ab1   691 
  209    BF474333Ld01P067C05P067C111F1_051.ab1   209 
  265  C BF474333Ld01P067C05P067C111R1_051.ab1   595 
  309    BF474333Ld01P067C05P067C111F1_051.ab1   309 
  313  C BF474333Ld01P067C05P067C111R1_051.ab1   547 
  485    BF474333Ld01P067C05P067C111F1_051.ab1   485 
  533  C BF474333Ld01P067C05P067C111R1_051.ab1   327 
  541    BF474333Ld01P067C05P067C111F1_051.ab1   541 
  629  C BF474333Ld01P067C05P067C111R1_051.ab1   231 
  633    BF474333Ld01P067C05P067C111F1_051.ab1   633 
  645  C BF474333Ld01P067C05P067C111R1_051.ab1   215 
  653    BF474333Ld01P067C05P067C111F1_051.ab1   653 
  665  C BF474333Ld01P067C05P067C111R1_051.ab1   195 
  713    BF474333Ld01P067C05P067C111F1_051.ab1   713 
  725  C BF474333Ld01P067C05P067C111R1_051.ab1   135 
  753    BF474333Ld01P067C05P067C111F1_051.ab1   753 
  757  C BF474333Ld01P067C05P067C111R1_051.ab1   103 
Contig length: old 859, new 859

Contig length: old 859, new 859
New start: 0