No. words: 1776; after pruning: 1750


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 18.6 (1,1:869)  861  0.00 0.12 0.00  BF474333Ld04P067C05P067C111F1_062.ab1        1   868 (9)  C BF474333Ld04P067C05P067C111R1_062.ab1   (29)   870     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  434 nodes

 219 str. conn. components

Path
    1  C BF474333Ld04P067C05P067C111R1_062.ab1   899 
   33    BF474333Ld04P067C05P067C111F1_062.ab1     4 
   49  C BF474333Ld04P067C05P067C111R1_062.ab1   851 
   53    BF474333Ld04P067C05P067C111F1_062.ab1    24 
   69  C BF474333Ld04P067C05P067C111R1_062.ab1   831 
   77    BF474333Ld04P067C05P067C111F1_062.ab1    48 
  181  C BF474333Ld04P067C05P067C111R1_062.ab1   719 
  185    BF474333Ld04P067C05P067C111F1_062.ab1   156 
  205  C BF474333Ld04P067C05P067C111R1_062.ab1   695 
  217    BF474333Ld04P067C05P067C111F1_062.ab1   188 
  229  C BF474333Ld04P067C05P067C111R1_062.ab1   671 
  249    BF474333Ld04P067C05P067C111F1_062.ab1   220 
  269  C BF474333Ld04P067C05P067C111R1_062.ab1   631 
  525    BF474333Ld04P067C05P067C111F1_062.ab1   496 
  633  C BF474333Ld04P067C05P067C111R1_062.ab1   267 
  641    BF474333Ld04P067C05P067C111F1_062.ab1   612 
  661  C BF474333Ld04P067C05P067C111R1_062.ab1   239 
  677    BF474333Ld04P067C05P067C111F1_062.ab1   648 
  697  C BF474333Ld04P067C05P067C111R1_062.ab1   203 
  749    BF474333Ld04P067C05P067C111F1_062.ab1   720 
  753  C BF474333Ld04P067C05P067C111R1_062.ab1   147 
  869    BF474333Ld04P067C05P067C111F1_062.ab1   840 
  873  C BF474333Ld04P067C05P067C111R1_062.ab1    27 
  883    BF474333Ld04P067C05P067C111F1_062.ab1   853 
  887  C BF474333Ld04P067C05P067C111R1_062.ab1    13 
  895    BF474333Ld04P067C05P067C111F1_062.ab1   865 
Contig length: old 906, new 907

Contig length: old 907, new 907
New start: 0