No. words: 1672; after pruning: 1646


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.0 (1,1:795)  779  0.50 0.00 0.00  BF474333Ld07P067C05P067C111F1_056.ab1        1   796 (28)  C BF474333Ld07P067C05P067C111R1_056.ab1   (52)   796     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C BF474333Ld07P067C05P067C111R1_056.ab1   848 
   60    BF474333Ld07P067C05P067C111F1_056.ab1     8 
   68  C BF474333Ld07P067C05P067C111R1_056.ab1   781 
   90    BF474333Ld07P067C05P067C111F1_056.ab1    38 
  118  C BF474333Ld07P067C05P067C111R1_056.ab1   731 
  130    BF474333Ld07P067C05P067C111F1_056.ab1    78 
  234  C BF474333Ld07P067C05P067C111R1_056.ab1   615 
  238    BF474333Ld07P067C05P067C111F1_056.ab1   186 
  294  C BF474333Ld07P067C05P067C111R1_056.ab1   555 
  298    BF474333Ld07P067C05P067C111F1_056.ab1   246 
  334  C BF474333Ld07P067C05P067C111R1_056.ab1   515 
  338    BF474333Ld07P067C05P067C111F1_056.ab1   286 
  342  C BF474333Ld07P067C05P067C111R1_056.ab1   507 
  446    BF474333Ld07P067C05P067C111F1_056.ab1   394 
  674  C BF474333Ld07P067C05P067C111R1_056.ab1   175 
  682    BF474333Ld07P067C05P067C111F1_056.ab1   630 
  706  C BF474333Ld07P067C05P067C111R1_056.ab1   143 
  730    BF474333Ld07P067C05P067C111F1_056.ab1   678 
  742  C BF474333Ld07P067C05P067C111R1_056.ab1   107 
  758    BF474333Ld07P067C05P067C111F1_056.ab1   706 
  766  C BF474333Ld07P067C05P067C111R1_056.ab1    83 
  782    BF474333Ld07P067C05P067C111F1_056.ab1   730 
  786  C BF474333Ld07P067C05P067C111R1_056.ab1    63 
  806    BF474333Ld07P067C05P067C111F1_056.ab1   754 
  810  C BF474333Ld07P067C05P067C111R1_056.ab1    39 
  818    BF474333Ld07P067C05P067C111F1_056.ab1   766 
  822  C BF474333Ld07P067C05P067C111R1_056.ab1    27 
  830    BF474333Ld07P067C05P067C111F1_056.ab1   778 
Contig length: old 876, new 876

Contig length: old 876, new 876
New start: 0