No. words: 1695; after pruning: 1669


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.8 (1,1:859)  826  0.00 0.00 0.12  BF474333Ld13P067C05P067C111F1_088.ab1        1   835 (0)  C BF474333Ld13P067C05P067C111R1_088.ab1   (1)   859    26 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  416 nodes

 210 str. conn. components

Path
    1  C BF474333Ld13P067C05P067C111R1_088.ab1   860 
    5    BF474333Ld13P067C05P067C111F1_088.ab1     4 
   17  C BF474333Ld13P067C05P067C111R1_088.ab1   844 
   21    BF474333Ld13P067C05P067C111F1_088.ab1    20 
   29  C BF474333Ld13P067C05P067C111R1_088.ab1   832 
   47    BF474333Ld13P067C05P067C111F1_088.ab1    47 
   79  C BF474333Ld13P067C05P067C111R1_088.ab1   782 
   83    BF474333Ld13P067C05P067C111F1_088.ab1    83 
  327  C BF474333Ld13P067C05P067C111R1_088.ab1   534 
  535    BF474333Ld13P067C05P067C111F1_088.ab1   535 
  595  C BF474333Ld13P067C05P067C111R1_088.ab1   266 
  819    BF474333Ld13P067C05P067C111F1_088.ab1   819 
  823  C BF474333Ld13P067C05P067C111R1_088.ab1    38 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0