No. words: 1703; after pruning: 1663


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.9 (1,1:868)  816  0.24 0.00 0.12  BF474333Ld14P067C05P067C111F1_086.ab1        1   829 (0)  C BF474333Ld14P067C05P067C111R1_086.ab1   (6)   868    41 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C BF474333Ld14P067C05P067C111R1_086.ab1   874 
   10    BF474333Ld14P067C05P067C111F1_086.ab1     4 
   38  C BF474333Ld14P067C05P067C111R1_086.ab1   837 
   56    BF474333Ld14P067C05P067C111F1_086.ab1    51 
  317  C BF474333Ld14P067C05P067C111R1_086.ab1   558 
  321    BF474333Ld14P067C05P067C111F1_086.ab1   316 
  517  C BF474333Ld14P067C05P067C111R1_086.ab1   358 
  785    BF474333Ld14P067C05P067C111F1_086.ab1   780 
  789  C BF474333Ld14P067C05P067C111R1_086.ab1    86 
Contig length: old 874, new 874

Contig length: old 874, new 874
New start: 0 
S Change at: 830; seg lengths: entry 1, contig 1