No. words: 1718; after pruning: 1692


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.7 (1,1:866)  839  0.00 0.00 0.00  BF474333Ld15P067C05P067C111F1_084.ab1        1   842 (0)  C BF474333Ld15P067C05P067C111R1_084.ab1   (9)   867    26 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  422 nodes

 213 str. conn. components

Path
    1  C BF474333Ld15P067C05P067C111R1_084.ab1   876 
   13    BF474333Ld15P067C05P067C111F1_084.ab1     4 
   45  C BF474333Ld15P067C05P067C111R1_084.ab1   832 
   57    BF474333Ld15P067C05P067C111F1_084.ab1    48 
  221  C BF474333Ld15P067C05P067C111R1_084.ab1   656 
  233    BF474333Ld15P067C05P067C111F1_084.ab1   224 
  601  C BF474333Ld15P067C05P067C111R1_084.ab1   276 
  609    BF474333Ld15P067C05P067C111F1_084.ab1   600 
  613  C BF474333Ld15P067C05P067C111R1_084.ab1   264 
  825    BF474333Ld15P067C05P067C111F1_084.ab1   816 
  829  C BF474333Ld15P067C05P067C111R1_084.ab1    48 
Contig length: old 876, new 876

Contig length: old 876, new 876
New start: 0