No. words: 2131; after pruning: 2065


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 7.8 (1,1:620)  356  0.55 0.00 0.00  BF474333Tu02P067C05P067C111F1_009.ab1      134   494 (0)  C BF474333Tu02P067C05P067C111R1_009.ab1   (0)   488   128 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (2,1:710)  481  0.41 0.00 0.00  BF474333Tu02P067C05P067C111R1_009.ab1        1   488 (0)    BF474333Tu02P067C05P067C111R1_088.ab1       91   578 (0) *
Fail: (1)  133  -28.2 7.1 (3,1:-107)  327  0.30 0.00 0.00  BF474333Tu02P067C05P067C111R1_088.ab1      248   578 (0)  C BF474333Tu02P067C05P067C111F1_088.ab1   (0)   571   241 *
  Worst pair: offset 0 
LLR breakdown: discreps: -38.6 (<20 part: -0.2 (#=1), >20:-38.4 (#=8); in HQ: -38.6, out HQ 0.0), match: 10.3  total: -28.3  429  0.22 1.72 0.00  BF474333Tu02P067C05P067C111F1_009.ab1        1   464 (30)    BF474333Tu02P067C05P067C111F1_088.ab1      100   571 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0
-28.2       0        1

Gap   # merges  # failures
 size
 0       1        0
133       0        1

Offset
  0       4 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 


Contig 2:  592 nodes

 219 str. conn. components

Path
    1    BF474333Tu02P067C05P067C111R1_088.ab1     1 
  283    BF474333Tu02P067C05P067C111R1_009.ab1   193 
  287    BF474333Tu02P067C05P067C111R1_088.ab1   287 
  295    BF474333Tu02P067C05P067C111R1_009.ab1   205 
  337  C BF474333Tu02P067C05P067C111F1_009.ab1   375 
  341    BF474333Tu02P067C05P067C111R1_088.ab1   341 
  345    BF474333Tu02P067C05P067C111R1_009.ab1   255 
  351    BF474333Tu02P067C05P067C111R1_088.ab1   351 
  355    BF474333Tu02P067C05P067C111R1_009.ab1   265 
  357  C BF474333Tu02P067C05P067C111F1_009.ab1   355 
  377    BF474333Tu02P067C05P067C111R1_009.ab1   287 
  389  C BF474333Tu02P067C05P067C111F1_009.ab1   323 
  405    BF474333Tu02P067C05P067C111R1_009.ab1   315 
  413  C BF474333Tu02P067C05P067C111F1_009.ab1   299 
Contig length: old 711, new 711

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BF474333Tu02P067C05P067C111F1_088.ab1     1 
Contig length: old 571, new 571

Contig length: old 711, new 711
New start: 0