No. words: 960; after pruning: 934


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 6.6 (1,1:434)  425  0.00 0.00 0.00  BF478499At02P078G05P078G111F1_019.ab1        1   429 (49)  C BF478499At02P078G05P078G111R1_019.ab1   (47)   435     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C BF478499At02P078G05P078G111R1_019.ab1   482 
   72    BF478499At02P078G05P078G111F1_019.ab1    25 
   80  C BF478499At02P078G05P078G111R1_019.ab1   403 
   92    BF478499At02P078G05P078G111F1_019.ab1    45 
  104  C BF478499At02P078G05P078G111R1_019.ab1   379 
  136    BF478499At02P078G05P078G111F1_019.ab1    89 
  144  C BF478499At02P078G05P078G111R1_019.ab1   339 
  240    BF478499At02P078G05P078G111F1_019.ab1   193 
  252  C BF478499At02P078G05P078G111R1_019.ab1   231 
  316    BF478499At02P078G05P078G111F1_019.ab1   269 
  396  C BF478499At02P078G05P078G111R1_019.ab1    87 
  400    BF478499At02P078G05P078G111F1_019.ab1   353 
Contig length: old 525, new 525

Contig length: old 525, new 525
New start: 0