No. words: 1170; after pruning: 1144


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.5 (1,1:420)  403  0.00 0.00 0.24  BF478499Ld05P078G05P078G111F1_047.ab1        1   419 (146)  C BF478499Ld05P078G05P078G111R1_047.ab1   (185)   420     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C BF478499Ld05P078G05P078G111R1_047.ab1   605 
  236    BF478499Ld05P078G05P078G111F1_047.ab1    51 
  244  C BF478499Ld05P078G05P078G111R1_047.ab1   362 
  252    BF478499Ld05P078G05P078G111F1_047.ab1    67 
  260  C BF478499Ld05P078G05P078G111R1_047.ab1   346 
  264    BF478499Ld05P078G05P078G111F1_047.ab1    79 
  300  C BF478499Ld05P078G05P078G111R1_047.ab1   306 
  332    BF478499Ld05P078G05P078G111F1_047.ab1   147 
  504  C BF478499Ld05P078G05P078G111R1_047.ab1   102 
  512    BF478499Ld05P078G05P078G111F1_047.ab1   327 
Contig length: old 749, new 750

Contig length: old 750, new 750
New start: 0