No. words: 1208; after pruning: 1182


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.6 (1,1:428)  408  1.17 0.00 0.00  BF478499Ld07P078G05P078G111F1_043.ab1        1   427 (162)  C BF478499Ld07P078G05P078G111R1_043.ab1   (190)   429     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C BF478499Ld07P078G05P078G111R1_043.ab1   619 
  398    BF478499Ld07P078G05P078G111F1_043.ab1   208 
  402  C BF478499Ld07P078G05P078G111R1_043.ab1   218 
  410    BF478499Ld07P078G05P078G111F1_043.ab1   220 
  414  C BF478499Ld07P078G05P078G111R1_043.ab1   206 
  458    BF478499Ld07P078G05P078G111F1_043.ab1   268 
  466  C BF478499Ld07P078G05P078G111R1_043.ab1   154 
  530    BF478499Ld07P078G05P078G111F1_043.ab1   340 
Contig length: old 779, new 779

Contig length: old 779, new 779
New start: 0