No. words: 1175; after pruning: 1149


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:842)  318  0.60 0.30 0.00  BF478559Ld04P078H05P078H111F1_046.ab1      296   626 (0)  C BF478559Ld04P078H05P078H111R1_046.ab1   (0)   549   218 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1    BF478559Ld04P078H05P078H111F1_046.ab1     1 
  469  C BF478559Ld04P078H05P078H111R1_046.ab1   376 
  477    BF478559Ld04P078H05P078H111F1_046.ab1   477 
  485  C BF478559Ld04P078H05P078H111R1_046.ab1   360 
  497    BF478559Ld04P078H05P078H111F1_046.ab1   497 
  501  C BF478559Ld04P078H05P078H111R1_046.ab1   344 
  505    BF478559Ld04P078H05P078H111F1_046.ab1   505 
  517  C BF478559Ld04P078H05P078H111R1_046.ab1   328 
  521    BF478559Ld04P078H05P078H111F1_046.ab1   521 
  538  C BF478559Ld04P078H05P078H111R1_046.ab1   307 
  550    BF478559Ld04P078H05P078H111F1_046.ab1   550 
  558  C BF478559Ld04P078H05P078H111R1_046.ab1   287 
  570    BF478559Ld04P078H05P078H111F1_046.ab1   570 
  574  C BF478559Ld04P078H05P078H111R1_046.ab1   271 
Contig length: old 843, new 844

Contig length: old 844, new 844
New start: 0