No. words: 2977; after pruning: 2925


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.8 (1,1:840)  725  0.14 0.00 0.00  BF478559Ld07P078H05P078H111F1_047.ab1      110   840 (2)  C BF478559Ld07P078H05P078H111R1_047.ab1   (0)   732     2 *
Merge:(0)    0    0.0 12.2 (1,1:850)  550  0.00 0.00 0.00  BF478559Ld07P078H05P078H111F1_094.ab1      188   739 (0)  C BF478559Ld07P078H05P078H111R1_094.ab1   (0)   664   113 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  278 nodes

 141 str. conn. components

Path
    1    BF478559Ld07P078H05P078H111F1_094.ab1     1 
  499  C BF478559Ld07P078H05P078H111R1_094.ab1   353 
  507    BF478559Ld07P078H05P078H111F1_094.ab1   507 
  547  C BF478559Ld07P078H05P078H111R1_094.ab1   305 
  555    BF478559Ld07P078H05P078H111F1_094.ab1   555 
  559  C BF478559Ld07P078H05P078H111R1_094.ab1   293 
  579    BF478559Ld07P078H05P078H111F1_094.ab1   579 
  583  C BF478559Ld07P078H05P078H111R1_094.ab1   269 
  587    BF478559Ld07P078H05P078H111F1_094.ab1   587 
  599  C BF478559Ld07P078H05P078H111R1_094.ab1   253 
  619    BF478559Ld07P078H05P078H111F1_094.ab1   619 
  623  C BF478559Ld07P078H05P078H111R1_094.ab1   229 
  639    BF478559Ld07P078H05P078H111F1_094.ab1   639 
  647  C BF478559Ld07P078H05P078H111R1_094.ab1   205 
Contig length: old 851, new 851

Contig 1:  364 nodes

 184 str. conn. components

Path
    1    BF478559Ld07P078H05P078H111F1_047.ab1     1 
  621  C BF478559Ld07P078H05P078H111R1_047.ab1   221 
  625    BF478559Ld07P078H05P078H111F1_047.ab1   625 
  645  C BF478559Ld07P078H05P078H111R1_047.ab1   197 
  761    BF478559Ld07P078H05P078H111F1_047.ab1   761 
  765  C BF478559Ld07P078H05P078H111R1_047.ab1    77 
  793    BF478559Ld07P078H05P078H111F1_047.ab1   793 
  804  C BF478559Ld07P078H05P078H111R1_047.ab1    38 
  832    BF478559Ld07P078H05P078H111F1_047.ab1   832 
Contig length: old 842, new 842

Contig length: old 851, new 851
New start: 0 

Contig length: old 842, new 842
New start: 0