No. words: 2737; after pruning: 2685


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.6 (1,1:829)  795  0.25 0.00 0.12  BF478559Ld12P078H05P078H111F1_084.ab1       24   831 (34)  C BF478559Ld12P078H05P078H111R1_084.ab1   (0)   807     1 *
 0  -10  807 854    231     S 0- 230
Fail: (1)  231    0.0 2.1 (2,1:10)  568  0.35 0.00 0.00  BF478559Ld12P078H05P078H111F1_084.ab1      242   818 (47)    BF478559Ld12P078H05P078H111F1_037.ab1      232   808 (0)  

Pass: 3
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        1

Gap   # merges  # failures
 size
 0       1        0
231       0        1

Offset
  0       2 
  1       1 

Pass 4
             Gap  Score    
 0  -10  807 854    231     S 0- 230
Fail: (1)  231    0.0 2.1 (2,1:10)  568  0.35 0.00 0.00  BF478559Ld12P078H05P078H111F1_084.ab1      242   818 (47)    BF478559Ld12P078H05P078H111F1_037.ab1      232   808 (0)  
Merge:(0)    0    0.0 0.8 (1,1:71)   67  0.00 0.00 1.39  BF478559Ld12P078H05P078H111F1_037.ab1        1    72 (736)  C BF478559Ld12P078H05P078H111R1_037.ab1   (186)    71     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        1

Gap   # merges  # failures
 size
 0       1        0
231       0        1

Offset
  0       2 
  1       1 

Read equivalence class histogram:
    1    2
    2    1

Chimera merges: 


Contig 2:  398 nodes

 201 str. conn. components

Path
    1    BF478559Ld12P078H05P078H111F1_084.ab1     1 
  619  C BF478559Ld12P078H05P078H111R1_084.ab1   212 
  623    BF478559Ld12P078H05P078H111F1_084.ab1   623 
  639  C BF478559Ld12P078H05P078H111R1_084.ab1   192 
  643    BF478559Ld12P078H05P078H111F1_084.ab1   643 
  655  C BF478559Ld12P078H05P078H111R1_084.ab1   176 
  723    BF478559Ld12P078H05P078H111F1_084.ab1   723 
  727  C BF478559Ld12P078H05P078H111R1_084.ab1   104 
  783    BF478559Ld12P078H05P078H111F1_084.ab1   783 
  803  C BF478559Ld12P078H05P078H111R1_084.ab1    28 
  815    BF478559Ld12P078H05P078H111F1_084.ab1   815 
Contig length: old 865, new 865

Contig 1:  34 nodes

 19 str. conn. components

Path
    1  C BF478559Ld12P078H05P078H111R1_037.ab1   257 
  206    BF478559Ld12P078H05P078H111F1_037.ab1    20 
  214  C BF478559Ld12P078H05P078H111R1_037.ab1    44 
  218    BF478559Ld12P078H05P078H111F1_037.ab1    32 
  226  C BF478559Ld12P078H05P078H111R1_037.ab1    32 
  244    BF478559Ld12P078H05P078H111F1_037.ab1    59 
  248  C BF478559Ld12P078H05P078H111R1_037.ab1    10 
  252    BF478559Ld12P078H05P078H111F1_037.ab1    67 
Contig length: old 993, new 993

Contig length: old 865, new 865
New start: 0 

Contig length: old 993, new 993
New start: 0