No. words: 1793; after pruning: 1753


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:1309)  472  0.62 0.00 0.00  BF482436Ld01P078B06P078B121F1_031.ab1      398   880 (0)  C BF482436Ld01P078B06P078B121R1_031.ab1   (0)   913   431 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1    BF482436Ld01P078B06P078B121F1_031.ab1     1 
  596  C BF482436Ld01P078B06P078B121R1_031.ab1   715 
  600    BF482436Ld01P078B06P078B121F1_031.ab1   600 
  656  C BF482436Ld01P078B06P078B121R1_031.ab1   655 
  668    BF482436Ld01P078B06P078B121F1_031.ab1   668 
  672  C BF482436Ld01P078B06P078B121R1_031.ab1   639 
Contig length: old 1310, new 1310

Contig length: old 1310, new 1310
New start: 0