No. words: 1734; after pruning: 1680


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:1311)  416  0.47 0.00 0.00  BF482436Ld05P078B06P078B121F1_023.ab1      480   901 (0)  C BF482436Ld05P078B06P078B121R1_023.ab1   (0)   833   412 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1    BF482436Ld05P078B06P078B121F1_023.ab1     1 
  608  C BF482436Ld05P078B06P078B121R1_023.ab1   705 
  612    BF482436Ld05P078B06P078B121F1_023.ab1   612 
  620  C BF482436Ld05P078B06P078B121R1_023.ab1   693 
  644    BF482436Ld05P078B06P078B121F1_023.ab1   644 
  648  C BF482436Ld05P078B06P078B121R1_023.ab1   665 
Contig length: old 1312, new 1312

Contig length: old 1312, new 1312
New start: 0