No. words: 1405; after pruning: 1365


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.1 (1,1:1292)   98  1.79 0.89 0.89  BF482436Tu02P078B06P078B121F1_054.ab1      591   702 (0)  C BF482436Tu02P078B06P078B121R1_054.ab1   (0)   703   592 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    BF482436Tu02P078B06P078B121F1_054.ab1     1 
  614  C BF482436Tu02P078B06P078B121R1_054.ab1   680 
  622    BF482436Tu02P078B06P078B121F1_054.ab1   622 
  626  C BF482436Tu02P078B06P078B121R1_054.ab1   668 
  638    BF482436Tu02P078B06P078B121F1_054.ab1   638 
  642  C BF482436Tu02P078B06P078B121R1_054.ab1   652 
Contig length: old 1293, new 1293

Contig length: old 1293, new 1294
New start: 0 
I Change at: 671; seg lengths: entry 2, contig 1