No. words: 1253; after pruning: 1227


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:474)  472  0.00 0.00 0.00  BF482939Ld12P081E01P081E071F1_043.ab1        1   475 (145)  C BF482939Ld12P081E01P081E071R1_043.ab1   (158)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BF482939Ld12P081E01P081E071R1_043.ab1   633 
  210    BF482939Ld12P081E01P081E071F1_043.ab1    52 
  222  C BF482939Ld12P081E01P081E071R1_043.ab1   412 
  510    BF482939Ld12P081E01P081E071F1_043.ab1   352 
  518  C BF482939Ld12P081E01P081E071R1_043.ab1   116 
  538    BF482939Ld12P081E01P081E071F1_043.ab1   380 
Contig length: old 778, new 778

Contig length: old 778, new 778
New start: 0