No. words: 1644; after pruning: 1618


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.5 (1,1:786)  778  0.00 0.13 0.00  BF482977Sn30P088F09P095B121F1_052.ab1        2   786 (19)  C BF482977Sn30P088F09P095B121R1_052.ab1   (52)   787     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C BF482977Sn30P088F09P095B121R1_052.ab1   839 
   73    BF482977Sn30P088F09P095B121F1_052.ab1    21 
   85  C BF482977Sn30P088F09P095B121R1_052.ab1   755 
   89    BF482977Sn30P088F09P095B121F1_052.ab1    37 
  185  C BF482977Sn30P088F09P095B121R1_052.ab1   655 
  189    BF482977Sn30P088F09P095B121F1_052.ab1   137 
  201  C BF482977Sn30P088F09P095B121R1_052.ab1   639 
  217    BF482977Sn30P088F09P095B121F1_052.ab1   165 
  293  C BF482977Sn30P088F09P095B121R1_052.ab1   547 
  297    BF482977Sn30P088F09P095B121F1_052.ab1   245 
  341  C BF482977Sn30P088F09P095B121R1_052.ab1   499 
  797    BF482977Sn30P088F09P095B121F1_052.ab1   745 
  801  C BF482977Sn30P088F09P095B121R1_052.ab1    39 
  825    BF482977Sn30P088F09P095B121F1_052.ab1   773 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0