No. words: 1665; after pruning: 1611


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:789)  785  0.25 0.00 0.00  BF482977Ta16P088F09P095B121F1_034.ab1        1   790 (47)  C BF482977Ta16P088F09P095B121R1_034.ab1   (38)   790     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  392 nodes

 198 str. conn. components

Path
    1  C BF482977Ta16P088F09P095B121R1_034.ab1   828 
   42    BF482977Ta16P088F09P095B121F1_034.ab1     4 
  661  C BF482977Ta16P088F09P095B121R1_034.ab1   168 
  677    BF482977Ta16P088F09P095B121F1_034.ab1   639 
  685  C BF482977Ta16P088F09P095B121R1_034.ab1   144 
  689    BF482977Ta16P088F09P095B121F1_034.ab1   651 
  713  C BF482977Ta16P088F09P095B121R1_034.ab1   116 
  717    BF482977Ta16P088F09P095B121F1_034.ab1   679 
  721  C BF482977Ta16P088F09P095B121R1_034.ab1   108 
  737    BF482977Ta16P088F09P095B121F1_034.ab1   699 
  741  C BF482977Ta16P088F09P095B121R1_034.ab1    88 
  825    BF482977Ta16P088F09P095B121F1_034.ab1   787 
Contig length: old 875, new 875

Contig length: old 875, new 875
New start: 0