No. words: 1663; after pruning: 1637


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:782)  776  0.00 0.13 0.00  BF482977Td03P088F09P095B121F1_045.ab1        1   783 (46)  C BF482977Td03P088F09P095B121R1_045.ab1   (50)   784     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C BF482977Td03P088F09P095B121R1_045.ab1   834 
   54    BF482977Td03P088F09P095B121F1_045.ab1     4 
   58  C BF482977Td03P088F09P095B121R1_045.ab1   777 
   70    BF482977Td03P088F09P095B121F1_045.ab1    19 
  342  C BF482977Td03P088F09P095B121R1_045.ab1   493 
  686    BF482977Td03P088F09P095B121F1_045.ab1   635 
  690  C BF482977Td03P088F09P095B121R1_045.ab1   145 
  698    BF482977Td03P088F09P095B121F1_045.ab1   647 
  722  C BF482977Td03P088F09P095B121R1_045.ab1   113 
  742    BF482977Td03P088F09P095B121F1_045.ab1   691 
  746  C BF482977Td03P088F09P095B121R1_045.ab1    89 
  826    BF482977Td03P088F09P095B121F1_045.ab1   775 
Contig length: old 880, new 880

Contig length: old 880, new 880
New start: 0