No. words: 1628; after pruning: 1588


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.7 (1,1:775)  760  0.39 0.13 0.00  BF482977Td05P052D09P027A091F1_007.ab1        1   776 (46)  C BF482977Td05P052D09P027A091R1_007.ab1   (29)   777     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  380 nodes

 192 str. conn. components

Path
    1  C BF482977Td05P052D09P027A091R1_007.ab1   806 
   33    BF482977Td05P052D09P027A091F1_007.ab1     4 
  122  C BF482977Td05P052D09P027A091R1_007.ab1   684 
  126    BF482977Td05P052D09P027A091F1_007.ab1    97 
  498  C BF482977Td05P052D09P027A091R1_007.ab1   308 
  506    BF482977Td05P052D09P027A091F1_007.ab1   477 
  542  C BF482977Td05P052D09P027A091R1_007.ab1   264 
  546    BF482977Td05P052D09P027A091F1_007.ab1   517 
  590  C BF482977Td05P052D09P027A091R1_007.ab1   216 
  598    BF482977Td05P052D09P027A091F1_007.ab1   569 
  602  C BF482977Td05P052D09P027A091R1_007.ab1   204 
  618    BF482977Td05P052D09P027A091F1_007.ab1   589 
  622  C BF482977Td05P052D09P027A091R1_007.ab1   184 
  630    BF482977Td05P052D09P027A091F1_007.ab1   601 
  638  C BF482977Td05P052D09P027A091R1_007.ab1   168 
  642    BF482977Td05P052D09P027A091F1_007.ab1   613 
  646  C BF482977Td05P052D09P027A091R1_007.ab1   160 
  650    BF482977Td05P052D09P027A091F1_007.ab1   621 
  654  C BF482977Td05P052D09P027A091R1_007.ab1   152 
  658    BF482977Td05P052D09P027A091F1_007.ab1   629 
  662  C BF482977Td05P052D09P027A091R1_007.ab1   144 
  670    BF482977Td05P052D09P027A091F1_007.ab1   641 
  678  C BF482977Td05P052D09P027A091R1_007.ab1   128 
  686    BF482977Td05P052D09P027A091F1_007.ab1   657 
  694  C BF482977Td05P052D09P027A091R1_007.ab1   112 
  698    BF482977Td05P052D09P027A091F1_007.ab1   669 
  702  C BF482977Td05P052D09P027A091R1_007.ab1   104 
  766    BF482977Td05P052D09P027A091F1_007.ab1   737 
  770  C BF482977Td05P052D09P027A091R1_007.ab1    36 
  802    BF482977Td05P052D09P027A091F1_007.ab1   773 
Contig length: old 852, new 851

Contig length: old 851, new 852
New start: 0 
I Change at: 41; seg lengths: entry 1, contig 0