No. words: 468; after pruning: 442


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   14   -1.7 -1.7 (1,1:115)   47 15.38 0.00 0.00  BF483299Ld15P078E06P078E121F1_086.ab1       15   105 (130)  C BF483299Ld15P078E06P078E121R1_086.ab1   (131)   102    12 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.7       1        0

Gap   # merges  # failures
 size
14       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  14 nodes

 9 str. conn. components

Path
    1  C BF483299Ld15P078E06P078E121R1_086.ab1   233 
  158    BF483299Ld15P078E06P078E121F1_086.ab1    41 
  162  C BF483299Ld15P078E06P078E121R1_086.ab1    72 
  174    BF483299Ld15P078E06P078E121F1_086.ab1    57 
Contig length: old 352, new 352

Contig length: old 352, new 352
New start: 0 
S Change at: 181; seg lengths: entry 3, contig 3
S Change at: 197; seg lengths: entry 3, contig 3
S Change at: 212; seg lengths: entry 2, contig 2
S Change at: 217; seg lengths: entry 1, contig 1