No. words: 840; after pruning: 788


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.6 (1,1:-8)  204  0.00 0.00 0.00  BF483299Sn25P078E06P101B121R1_049.ab1        1   207 (0)    BF483299Sn25P078E06P101B121R1_065.ab1        9   215 (1) *
Merge:(0)    0    0.0 3.5 (1,1:1)  202  0.00 0.00 0.48  BF483299Sn25P078E06P101B121F1_049.ab1        1   209 (0)    BF483299Sn25P078E06P101B121F1_065.ab1        1   208 (0) *
Merge:(0)    6   -3.6 2.0 (2,2:149)  137  0.67 0.67 0.67  BF483299Sn25P078E06P101B121F1_049.ab1        1   150 (59)  C BF483299Sn25P078E06P101B121R1_049.ab1   (57)   150     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.6 (<20 part: -0.3 (#=2), >20:-4.3 (#=2); in HQ: -4.6, out HQ 0.0), match: 3.3  total: -1.3  132  0.67 1.34 0.67  BF483299Sn25P078E06P101B121F1_065.ab1        1   149 (59)  C BF483299Sn25P078E06P101B121R1_049.ab1   (57)   150     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0
-3.6       1        0

Gap   # merges  # failures
 size
 0       2        0
 6       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  466 nodes

 150 str. conn. components

Path
    1  C BF483299Sn25P078E06P101B121R1_065.ab1   216 
   84  C BF483299Sn25P078E06P101B121R1_049.ab1   125 
  100  C BF483299Sn25P078E06P101B121R1_065.ab1   117 
  108    BF483299Sn25P078E06P101B121F1_049.ab1    49 
  111    BF483299Sn25P078E06P101B121F1_065.ab1    51 
  112  C BF483299Sn25P078E06P101B121R1_065.ab1   105 
  113  C BF483299Sn25P078E06P101B121R1_049.ab1    96 
  140    BF483299Sn25P078E06P101B121F1_049.ab1    81 
  239    BF483299Sn25P078E06P101B121F1_065.ab1   179 
  247    BF483299Sn25P078E06P101B121F1_049.ab1   188 
  251    BF483299Sn25P078E06P101B121F1_065.ab1   191 
  255    BF483299Sn25P078E06P101B121F1_049.ab1   196 
  263    BF483299Sn25P078E06P101B121F1_065.ab1   203 
Contig length: old 267, new 268

Contig length: old 268, new 268
New start: 0