No. words: 1032; after pruning: 1006


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.0 (1,1:364)  358  0.00 0.00 0.00  BF484268Ld04P027F03P027F091F1_062.ab1        5   364 (155)  C BF484268Ld04P027F03P027F091R1_062.ab1   (152)   361     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1  C BF484268Ld04P027F03P027F091R1_062.ab1   513 
  172    BF484268Ld04P027F03P027F091F1_062.ab1    24 
  176  C BF484268Ld04P027F03P027F091R1_062.ab1   338 
  192    BF484268Ld04P027F03P027F091F1_062.ab1    44 
  208  C BF484268Ld04P027F03P027F091R1_062.ab1   306 
  216    BF484268Ld04P027F03P027F091F1_062.ab1    68 
  224  C BF484268Ld04P027F03P027F091R1_062.ab1   290 
  232    BF484268Ld04P027F03P027F091F1_062.ab1    84 
  244  C BF484268Ld04P027F03P027F091R1_062.ab1   270 
  268    BF484268Ld04P027F03P027F091F1_062.ab1   120 
Contig length: old 667, new 667

Contig length: old 667, new 667
New start: 0