No. words: 1761; after pruning: 1735


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.9 (1,1:769)  744  0.91 0.00 0.13  BF484268Ld04P114H02P114C061F1_080.ab1        1   770 (109)  C BF484268Ld04P114H02P114C061R1_080.ab1   (113)   769     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  376 nodes

 190 str. conn. components

Path
    1  C BF484268Ld04P114H02P114C061R1_080.ab1   882 
  129    BF484268Ld04P114H02P114C061F1_080.ab1    16 
  145  C BF484268Ld04P114H02P114C061R1_080.ab1   738 
  161    BF484268Ld04P114H02P114C061F1_080.ab1    48 
  197  C BF484268Ld04P114H02P114C061R1_080.ab1   686 
  201    BF484268Ld04P114H02P114C061F1_080.ab1    88 
  241  C BF484268Ld04P114H02P114C061R1_080.ab1   642 
  261    BF484268Ld04P114H02P114C061F1_080.ab1   148 
  297  C BF484268Ld04P114H02P114C061R1_080.ab1   586 
  313    BF484268Ld04P114H02P114C061F1_080.ab1   200 
  357  C BF484268Ld04P114H02P114C061R1_080.ab1   526 
  405    BF484268Ld04P114H02P114C061F1_080.ab1   292 
  589  C BF484268Ld04P114H02P114C061R1_080.ab1   294 
  697    BF484268Ld04P114H02P114C061F1_080.ab1   584 
  729  C BF484268Ld04P114H02P114C061R1_080.ab1   154 
  737    BF484268Ld04P114H02P114C061F1_080.ab1   624 
  745  C BF484268Ld04P114H02P114C061R1_080.ab1   138 
  749    BF484268Ld04P114H02P114C061F1_080.ab1   636 
  753  C BF484268Ld04P114H02P114C061R1_080.ab1   130 
  769    BF484268Ld04P114H02P114C061F1_080.ab1   656 
  817  C BF484268Ld04P114H02P114C061R1_080.ab1    66 
  833    BF484268Ld04P114H02P114C061F1_080.ab1   720 
  868  C BF484268Ld04P114H02P114C061R1_080.ab1    16 
  872    BF484268Ld04P114H02P114C061F1_080.ab1   759 
Contig length: old 991, new 992

Contig length: old 992, new 992
New start: 0