No. words: 2318; after pruning: 2279


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:822)  655  0.00 0.00 0.00  BF484475Ld08P081H01P081H071F1_079.ab1       87   753 (0)  C BF484475Ld08P081H01P081H071R1_079.ab1   (0)   737    71 *
 0  -11  827 811    101     E 711- 811
Fail: (1)  101   -6.5 10.8 (2,1:11)  697  0.00 0.14 0.00  BF484475Ld08P081H01P081H071F1_079.ab1       13   722 (31)    BF484475Ld08P081H01P081H071F1_086.ab1        1   711 (117) *
  Worst pair: offset 0 
LLR breakdown: discreps: 0.0 (<20 part: 0.0 (#=0), >20:0.0 (#=0); in HQ: 0.0, out HQ 0.0), match: 14.2  lead: -20.7  total: -6.5  625  0.00 0.00 0.00  BF484475Ld08P081H01P081H071R1_079.ab1      102   737 (0)  C BF484475Ld08P081H01P081H071F1_086.ab1   (117)   711    76 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0
-6.5       0        1

Gap   # merges  # failures
 size
 0       1        0
101       0        1

Offset
  0       2 

Pass 4
             Gap  Score    
Merge:(0)  101   -6.5 10.8 (2,1:11)  697  0.00 0.14 0.00  BF484475Ld08P081H01P081H071F1_079.ab1       13   722 (31)    BF484475Ld08P081H01P081H071F1_086.ab1        1   711 (117) *
  Worst pair: offset 0 
LLR breakdown: discreps: 0.0 (<20 part: 0.0 (#=0), >20:0.0 (#=0); in HQ: 0.0, out HQ 0.0), match: 14.2  lead: -20.7  total: -6.5  625  0.00 0.00 0.00  BF484475Ld08P081H01P081H071R1_079.ab1      102   737 (0)  C BF484475Ld08P081H01P081H071F1_086.ab1   (117)   711    76 *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-6.5       1        0

Gap   # merges  # failures
 size
101       1        0

Offset
  0       1 

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  686 nodes

 346 str. conn. components

Path
    1    BF484475Ld08P081H01P081H071F1_079.ab1     1 
   17    BF484475Ld08P081H01P081H071F1_086.ab1     5 
   35    BF484475Ld08P081H01P081H071F1_079.ab1    34 
   39    BF484475Ld08P081H01P081H071F1_086.ab1    27 
   51    BF484475Ld08P081H01P081H071F1_079.ab1    50 
   59    BF484475Ld08P081H01P081H071F1_086.ab1    47 
   67    BF484475Ld08P081H01P081H071F1_079.ab1    66 
   75    BF484475Ld08P081H01P081H071F1_086.ab1    63 
   87    BF484475Ld08P081H01P081H071F1_079.ab1    86 
   91    BF484475Ld08P081H01P081H071F1_086.ab1    79 
  139    BF484475Ld08P081H01P081H071F1_079.ab1   138 
  151    BF484475Ld08P081H01P081H071F1_086.ab1   139 
  183    BF484475Ld08P081H01P081H071F1_079.ab1   182 
  199    BF484475Ld08P081H01P081H071F1_086.ab1   187 
  351    BF484475Ld08P081H01P081H071F1_079.ab1   350 
  412  C BF484475Ld08P081H01P081H071R1_079.ab1   413 
Contig length: old 839, new 824

Contig length: old 824, new 824
New start: 0