No. words: 887; after pruning: 861


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:277)  269  0.36 0.00 0.00  BF485381Ld05P081A02P081A081F1_069.ab1        1   278 (178)  C BF485381Ld05P081A02P081A081R1_069.ab1   (153)   278     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1  C BF485381Ld05P081A02P081A081R1_069.ab1   431 
  293    BF485381Ld05P081A02P081A081F1_069.ab1   140 
Contig length: old 609, new 609

Contig length: old 609, new 609
New start: 0