No. words: 1656; after pruning: 1630


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 16.5 (1,1:860)  747  0.63 0.00 0.00  BG263754At01P114H03P114H061F1_031.ab1       36   825 (5)  C BG263754At01P114H03P114H061R1_031.ab1   (0)   826    37 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1    BG263754At01P114H03P114H061F1_031.ab1     1 
   55  C BG263754At01P114H03P114H061R1_031.ab1   807 
   79    BG263754At01P114H03P114H061F1_031.ab1    79 
  103  C BG263754At01P114H03P114H061R1_031.ab1   759 
  107    BG263754At01P114H03P114H061F1_031.ab1   107 
  215  C BG263754At01P114H03P114H061R1_031.ab1   647 
  223    BG263754At01P114H03P114H061F1_031.ab1   223 
  247  C BG263754At01P114H03P114H061R1_031.ab1   615 
  255    BG263754At01P114H03P114H061F1_031.ab1   255 
  279  C BG263754At01P114H03P114H061R1_031.ab1   583 
  355    BG263754At01P114H03P114H061F1_031.ab1   355 
  367  C BG263754At01P114H03P114H061R1_031.ab1   495 
  395    BG263754At01P114H03P114H061F1_031.ab1   395 
  399  C BG263754At01P114H03P114H061R1_031.ab1   463 
  407    BG263754At01P114H03P114H061F1_031.ab1   407 
  463  C BG263754At01P114H03P114H061R1_031.ab1   399 
  471    BG263754At01P114H03P114H061F1_031.ab1   471 
  511  C BG263754At01P114H03P114H061R1_031.ab1   351 
  547    BG263754At01P114H03P114H061F1_031.ab1   547 
  559  C BG263754At01P114H03P114H061R1_031.ab1   303 
  583    BG263754At01P114H03P114H061F1_031.ab1   583 
  587  C BG263754At01P114H03P114H061R1_031.ab1   275 
  595    BG263754At01P114H03P114H061F1_031.ab1   595 
  619  C BG263754At01P114H03P114H061R1_031.ab1   243 
  671    BG263754At01P114H03P114H061F1_031.ab1   671 
  679  C BG263754At01P114H03P114H061R1_031.ab1   183 
  779    BG263754At01P114H03P114H061F1_031.ab1   779 
  798  C BG263754At01P114H03P114H061R1_031.ab1    64 
  806    BG263754At01P114H03P114H061F1_031.ab1   806 
  810  C BG263754At01P114H03P114H061R1_031.ab1    52 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0