No. words: 1485; after pruning: 1459


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.1 (1,1:881)  545  0.00 0.17 0.00  BG263754Ld01P114H03P114H061F1_062.ab1        4   576 (0)  C BG263754Ld01P114H03P114H061R1_062.ab1   (29)   880   307 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C BG263754Ld01P114H03P114H061R1_062.ab1   909 
   41    BG263754Ld01P114H03P114H061F1_062.ab1    14 
   45  C BG263754Ld01P114H03P114H061R1_062.ab1   865 
   49    BG263754Ld01P114H03P114H061F1_062.ab1    22 
  145  C BG263754Ld01P114H03P114H061R1_062.ab1   765 
  149    BG263754Ld01P114H03P114H061F1_062.ab1   122 
  181  C BG263754Ld01P114H03P114H061R1_062.ab1   729 
  185    BG263754Ld01P114H03P114H061F1_062.ab1   158 
  229  C BG263754Ld01P114H03P114H061R1_062.ab1   681 
  453    BG263754Ld01P114H03P114H061F1_062.ab1   426 
  573  C BG263754Ld01P114H03P114H061R1_062.ab1   337 
Contig length: old 909, new 909

Contig length: old 909, new 909
New start: 0