No. words: 1644; after pruning: 1618


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 15.0 (1,1:882)  706  0.53 0.13 0.00  BG263754Ld03P114H03P114H061F1_058.ab1        3   751 (0)  C BG263754Ld03P114H03P114H061R1_058.ab1   (11)   882   133 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C BG263754Ld03P114H03P114H061R1_058.ab1   893 
   24    BG263754Ld03P114H03P114H061F1_058.ab1    14 
   44  C BG263754Ld03P114H03P114H061R1_058.ab1   850 
   58    BG263754Ld03P114H03P114H061F1_058.ab1    48 
   86  C BG263754Ld03P114H03P114H061R1_058.ab1   808 
  101    BG263754Ld03P114H03P114H061F1_058.ab1    91 
  213  C BG263754Ld03P114H03P114H061R1_058.ab1   681 
  433    BG263754Ld03P114H03P114H061F1_058.ab1   423 
  593  C BG263754Ld03P114H03P114H061R1_058.ab1   301 
  661    BG263754Ld03P114H03P114H061F1_058.ab1   651 
  665  C BG263754Ld03P114H03P114H061R1_058.ab1   229 
  689    BG263754Ld03P114H03P114H061F1_058.ab1   679 
  705  C BG263754Ld03P114H03P114H061R1_058.ab1   189 
  713    BG263754Ld03P114H03P114H061F1_058.ab1   703 
  717  C BG263754Ld03P114H03P114H061R1_058.ab1   177 
Contig length: old 893, new 893

Contig length: old 893, new 893
New start: 0