No. words: 1743; after pruning: 1717


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.3 (1,1:881)  809  0.24 0.12 0.00  BG263754Ld04P114H03P114H061F1_056.ab1        3   850 (0)  C BG263754Ld04P114H03P114H061R1_056.ab1   (12)   881    33 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  418 nodes

 211 str. conn. components

Path
    1  C BG263754Ld04P114H03P114H061R1_056.ab1   893 
   25    BG263754Ld04P114H03P114H061F1_056.ab1    14 
  168  C BG263754Ld04P114H03P114H061R1_056.ab1   726 
  172    BG263754Ld04P114H03P114H061F1_056.ab1   161 
  176  C BG263754Ld04P114H03P114H061R1_056.ab1   718 
  180    BG263754Ld04P114H03P114H061F1_056.ab1   169 
  212  C BG263754Ld04P114H03P114H061R1_056.ab1   682 
  400    BG263754Ld04P114H03P114H061F1_056.ab1   389 
  648  C BG263754Ld04P114H03P114H061R1_056.ab1   246 
  656    BG263754Ld04P114H03P114H061F1_056.ab1   645 
  664  C BG263754Ld04P114H03P114H061R1_056.ab1   230 
  680    BG263754Ld04P114H03P114H061F1_056.ab1   669 
  688  C BG263754Ld04P114H03P114H061R1_056.ab1   206 
  696    BG263754Ld04P114H03P114H061F1_056.ab1   685 
  704  C BG263754Ld04P114H03P114H061R1_056.ab1   190 
Contig length: old 893, new 893

Contig length: old 893, new 893
New start: 0