No. words: 1594; after pruning: 1568


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.8 (1,1:881)  683  0.00 0.00 0.00  BG263754Ld05P114H03P114H061F1_054.ab1       52   763 (0)  C BG263754Ld05P114H03P114H061R1_054.ab1   (0)   831   120 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1    BG263754Ld05P114H03P114H061F1_054.ab1     1 
  199  C BG263754Ld05P114H03P114H061R1_054.ab1   684 
  255    BG263754Ld05P114H03P114H061F1_054.ab1   255 
  483  C BG263754Ld05P114H03P114H061R1_054.ab1   400 
  511    BG263754Ld05P114H03P114H061F1_054.ab1   511 
  587  C BG263754Ld05P114H03P114H061R1_054.ab1   296 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0