No. words: 1682; after pruning: 1656


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.7 (1,1:880)  765  0.00 0.13 0.00  BG263754Ld06P114H03P114H061F1_052.ab1        3   799 (0)  C BG263754Ld06P114H03P114H061R1_052.ab1   (3)   880    83 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C BG263754Ld06P114H03P114H061R1_052.ab1   883 
   16    BG263754Ld06P114H03P114H061F1_052.ab1    14 
  120  C BG263754Ld06P114H03P114H061R1_052.ab1   764 
  124    BG263754Ld06P114H03P114H061F1_052.ab1   122 
  168  C BG263754Ld06P114H03P114H061R1_052.ab1   716 
  172    BG263754Ld06P114H03P114H061F1_052.ab1   170 
  240  C BG263754Ld06P114H03P114H061R1_052.ab1   644 
  256    BG263754Ld06P114H03P114H061F1_052.ab1   254 
  576  C BG263754Ld06P114H03P114H061R1_052.ab1   308 
Contig length: old 883, new 883

Contig length: old 883, new 883
New start: 0