No. words: 1420; after pruning: 1380


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:881)  515  0.19 0.00 0.00  BG263754Ld08P114H03P114H061F1_079.ab1       23   560 (0)  C BG263754Ld08P114H03P114H061R1_079.ab1   (0)   860   323 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    BG263754Ld08P114H03P114H061F1_079.ab1     1 
  143  C BG263754Ld08P114H03P114H061R1_079.ab1   740 
  147    BG263754Ld08P114H03P114H061F1_079.ab1   147 
  241  C BG263754Ld08P114H03P114H061R1_079.ab1   642 
  509    BG263754Ld08P114H03P114H061F1_079.ab1   509 
  513  C BG263754Ld08P114H03P114H061R1_079.ab1   370 
  521    BG263754Ld08P114H03P114H061F1_079.ab1   521 
  533  C BG263754Ld08P114H03P114H061R1_079.ab1   350 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0