No. words: 1566; after pruning: 1526


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.2 (1,1:881)  657  0.15 0.00 0.00  BG263754Ld09P114H03P114H061F1_077.ab1       59   742 (0)  C BG263754Ld09P114H03P114H061R1_077.ab1   (0)   824   141 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1    BG263754Ld09P114H03P114H061F1_077.ab1     1 
  238  C BG263754Ld09P114H03P114H061R1_077.ab1   645 
  266    BG263754Ld09P114H03P114H061F1_077.ab1   266 
  282  C BG263754Ld09P114H03P114H061R1_077.ab1   601 
  302    BG263754Ld09P114H03P114H061F1_077.ab1   302 
  390  C BG263754Ld09P114H03P114H061R1_077.ab1   493 
  394    BG263754Ld09P114H03P114H061F1_077.ab1   394 
  446  C BG263754Ld09P114H03P114H061R1_077.ab1   437 
  502    BG263754Ld09P114H03P114H061F1_077.ab1   502 
  510  C BG263754Ld09P114H03P114H061R1_077.ab1   373 
  711    BG263754Ld09P114H03P114H061F1_077.ab1   711 
  715  C BG263754Ld09P114H03P114H061R1_077.ab1   168 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0