No. words: 1735; after pruning: 1709


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 16.9 (1,1:954)  778  0.00 0.00 0.00  BG263754Ld12P114D03P114G061F1_075.ab1       89   866 (0)  C BG263754Ld12P114D03P114G061R1_075.ab1   (2)   867    90 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1    BG263754Ld12P114D03P114G061F1_075.ab1     1 
  312  C BG263754Ld12P114D03P114G061R1_075.ab1   644 
  328    BG263754Ld12P114D03P114G061F1_075.ab1   328 
  372  C BG263754Ld12P114D03P114G061R1_075.ab1   584 
  436    BG263754Ld12P114D03P114G061F1_075.ab1   436 
  500  C BG263754Ld12P114D03P114G061R1_075.ab1   456 
  616    BG263754Ld12P114D03P114G061F1_075.ab1   616 
  620  C BG263754Ld12P114D03P114G061R1_075.ab1   336 
  624    BG263754Ld12P114D03P114G061F1_075.ab1   624 
  632  C BG263754Ld12P114D03P114G061R1_075.ab1   324 
Contig length: old 955, new 955

Contig length: old 955, new 955
New start: 0