No. words: 1691; after pruning: 1665


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.8 (1,1:881)  779  0.12 0.00 0.00  BG263754Ld12P114H03P114H061F1_071.ab1       47   855 (0)  C BG263754Ld12P114H03P114H061R1_071.ab1   (0)   836    28 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1    BG263754Ld12P114H03P114H061F1_071.ab1     1 
  118  C BG263754Ld12P114H03P114H061R1_071.ab1   765 
  122    BG263754Ld12P114H03P114H061F1_071.ab1   122 
  238  C BG263754Ld12P114H03P114H061R1_071.ab1   645 
  522    BG263754Ld12P114H03P114H061F1_071.ab1   522 
  638  C BG263754Ld12P114H03P114H061R1_071.ab1   245 
  650    BG263754Ld12P114H03P114H061F1_071.ab1   650 
  654  C BG263754Ld12P114H03P114H061R1_071.ab1   229 
  682    BG263754Ld12P114H03P114H061F1_071.ab1   682 
  690  C BG263754Ld12P114H03P114H061R1_071.ab1   193 
  842    BG263754Ld12P114H03P114H061F1_071.ab1   842 
  850  C BG263754Ld12P114H03P114H061R1_071.ab1    33 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0