No. words: 1355; after pruning: 1329


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.3 (1,1:523)  509  0.00 0.38 0.00  BG263758Ld07P081C02P081C081F1_073.ab1        4   523 (177)  C BG263758Ld07P081C02P081C081R1_073.ab1   (133)   522     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C BG263758Ld07P081C02P081C081R1_073.ab1   655 
  212    BG263758Ld07P081C02P081C081F1_073.ab1    80 
  216  C BG263758Ld07P081C02P081C081R1_073.ab1   440 
  264    BG263758Ld07P081C02P081C081F1_073.ab1   132 
  272  C BG263758Ld07P081C02P081C081R1_073.ab1   384 
  400    BG263758Ld07P081C02P081C081F1_073.ab1   268 
  464  C BG263758Ld07P081C02P081C081R1_073.ab1   192 
  496    BG263758Ld07P081C02P081C081F1_073.ab1   364 
Contig length: old 831, new 832

Contig length: old 832, new 832
New start: 0