No. words: 1045; after pruning: 1019


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.3 (1,1:474)  452  0.00 0.00 0.00  BG263769As02P081D02P081D081F1_064.ab1        5   475 (47)  C BG263769As02P081D02P081D081R1_064.ab1   (52)   471     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C BG263769As02P081D02P081D081R1_064.ab1   523 
   58    BG263769As02P081D02P081D081F1_064.ab1    10 
   66  C BG263769As02P081D02P081D081R1_064.ab1   458 
   70    BG263769As02P081D02P081D081F1_064.ab1    22 
  170  C BG263769As02P081D02P081D081R1_064.ab1   354 
  458    BG263769As02P081D02P081D081F1_064.ab1   410 
  462  C BG263769As02P081D02P081D081R1_064.ab1    62 
  506    BG263769As02P081D02P081D081F1_064.ab1   458 
Contig length: old 570, new 570

Contig length: old 570, new 570
New start: 0