No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:358)  342  0.56 0.00 0.00  BG263769Ld01P081D02P081D081F1_008.ab1        1   359 (184)  C BG263769Ld01P081D02P081D081R1_008.ab1   (152)   359     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C BG263769Ld01P081D02P081D081R1_008.ab1   511 
  218    BG263769Ld01P081D02P081D081F1_008.ab1    66 
  222  C BG263769Ld01P081D02P081D081R1_008.ab1   290 
  330    BG263769Ld01P081D02P081D081F1_008.ab1   178 
Contig length: old 695, new 695

Contig length: old 695, new 695
New start: 0