No. words: 1074; after pruning: 1048


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 7.8 (1,1:378)  362  0.00 0.27 0.00  BG263769Ld03P081D02P081D081F1_004.ab1        1   377 (170)  C BG263769Ld03P081D02P081D081R1_004.ab1   (147)   380     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C BG263769Ld03P081D02P081D081R1_004.ab1   527 
  197    BG263769Ld03P081D02P081D081F1_004.ab1    49 
  201  C BG263769Ld03P081D02P081D081R1_004.ab1   327 
  217    BG263769Ld03P081D02P081D081F1_004.ab1    69 
  225  C BG263769Ld03P081D02P081D081R1_004.ab1   303 
  233    BG263769Ld03P081D02P081D081F1_004.ab1    85 
  237  C BG263769Ld03P081D02P081D081R1_004.ab1   291 
  245    BG263769Ld03P081D02P081D081F1_004.ab1    97 
  253  C BG263769Ld03P081D02P081D081R1_004.ab1   275 
  261    BG263769Ld03P081D02P081D081F1_004.ab1   113 
  297  C BG263769Ld03P081D02P081D081R1_004.ab1   231 
  301    BG263769Ld03P081D02P081D081F1_004.ab1   153 
Contig length: old 695, new 695

Contig length: old 695, new 695
New start: 0