No. words: 1071; after pruning: 1045


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 3.9 (1,1:376)  354  0.00 0.00 0.27  BG263769Ld06P081D02P081D081F1_029.ab1        5   375 (171)  C BG263769Ld06P081D02P081D081R1_029.ab1   (153)   372     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1  C BG263769Ld06P081D02P081D081R1_029.ab1   525 
  171    BG263769Ld06P081D02P081D081F1_029.ab1    22 
  175  C BG263769Ld06P081D02P081D081R1_029.ab1   351 
  215    BG263769Ld06P081D02P081D081F1_029.ab1    66 
  219  C BG263769Ld06P081D02P081D081R1_029.ab1   307 
  231    BG263769Ld06P081D02P081D081F1_029.ab1    82 
  235  C BG263769Ld06P081D02P081D081R1_029.ab1   291 
  267    BG263769Ld06P081D02P081D081F1_029.ab1   118 
  295  C BG263769Ld06P081D02P081D081R1_029.ab1   231 
  299    BG263769Ld06P081D02P081D081F1_029.ab1   150 
Contig length: old 694, new 695

Contig length: old 695, new 695
New start: 0