No. words: 1306; after pruning: 1280


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:496)  469  0.00 0.00 0.40  BG263769Ld08P081D02P081D081F1_073.ab1        1   498 (164)  C BG263769Ld08P081D02P081D081R1_073.ab1   (148)   496     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C BG263769Ld08P081D02P081D081R1_073.ab1   644 
  176    BG263769Ld08P081D02P081D081F1_073.ab1    28 
  184  C BG263769Ld08P081D02P081D081R1_073.ab1   461 
  228    BG263769Ld08P081D02P081D081F1_073.ab1    80 
  240  C BG263769Ld08P081D02P081D081R1_073.ab1   405 
  244    BG263769Ld08P081D02P081D081F1_073.ab1    96 
  300  C BG263769Ld08P081D02P081D081R1_073.ab1   345 
  304    BG263769Ld08P081D02P081D081F1_073.ab1   156 
  308  C BG263769Ld08P081D02P081D081R1_073.ab1   337 
  356    BG263769Ld08P081D02P081D081F1_073.ab1   208 
  364  C BG263769Ld08P081D02P081D081R1_073.ab1   281 
  492    BG263769Ld08P081D02P081D081F1_073.ab1   344 
  496  C BG263769Ld08P081D02P081D081R1_073.ab1   149 
  508    BG263769Ld08P081D02P081D081F1_073.ab1   360 
  524  C BG263769Ld08P081D02P081D081R1_073.ab1   121 
  536    BG263769Ld08P081D02P081D081F1_073.ab1   388 
  544  C BG263769Ld08P081D02P081D081R1_073.ab1   101 
  552    BG263769Ld08P081D02P081D081F1_073.ab1   404 
  564  C BG263769Ld08P081D02P081D081R1_073.ab1    81 
  580    BG263769Ld08P081D02P081D081F1_073.ab1   432 
Contig length: old 809, new 810

Contig length: old 810, new 810
New start: 0