No. words: 1065; after pruning: 1039


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.5 (1,1:370)  329  1.61 0.00 0.80  BG263769Ld09P081D02P081D081F1_071.ab1        1   373 (164)  C BG263769Ld09P081D02P081D081R1_071.ab1   (158)   370     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C BG263769Ld09P081D02P081D081R1_071.ab1   528 
  225    BG263769Ld09P081D02P081D081F1_071.ab1    67 
  229  C BG263769Ld09P081D02P081D081R1_071.ab1   300 
  241    BG263769Ld09P081D02P081D081F1_071.ab1    83 
  249  C BG263769Ld09P081D02P081D081R1_071.ab1   280 
  261    BG263769Ld09P081D02P081D081F1_071.ab1   103 
Contig length: old 694, new 695

Contig length: old 695, new 695
New start: 0