No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.0 (1,1:373)  358  0.00 0.00 0.27  BG263769Ld10P081D02P081D081F1_069.ab1        1   374 (175)  C BG263769Ld10P081D02P081D081R1_069.ab1   (144)   373     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C BG263769Ld10P081D02P081D081R1_069.ab1   517 
  224    BG263769Ld10P081D02P081D081F1_069.ab1    80 
  232  C BG263769Ld10P081D02P081D081R1_069.ab1   286 
  240    BG263769Ld10P081D02P081D081F1_069.ab1    96 
  244  C BG263769Ld10P081D02P081D081R1_069.ab1   274 
  252    BG263769Ld10P081D02P081D081F1_069.ab1   108 
  268  C BG263769Ld10P081D02P081D081R1_069.ab1   250 
  272    BG263769Ld10P081D02P081D081F1_069.ab1   128 
  284  C BG263769Ld10P081D02P081D081R1_069.ab1   234 
  296    BG263769Ld10P081D02P081D081F1_069.ab1   152 
Contig length: old 692, new 693

Contig length: old 693, new 693
New start: 0